Lawrence Berkeley National Laboratory has deployed Meta’s Segment Anything Model 3 (SAM 3) and DINOv3 within the SYNAPS-I initiative to automate X-ray and neutron data analysis. Fine-tuned on scientific imaging data, these models replace manual segmentation bottlenecks with a pipeline that delivers semantically labeled 3D volumes in approximately 15 minutes.

  • The system processes tens of petabytes of annual data from DOE light and neutron source facilities.
  • SYNAPS-I fine-tuned the open-source foundation models on data collected at beamlines like the Advanced Light Source.
  • Deployed across 300 A100 GPUs at national supercomputing facilities, the pipeline enables real-time interpretation during experiments.
  • Demonstrated on grapevine drought response, the tool reduces expert annotation time from weeks to minutes.

This approach allows researchers to study dynamic biological processes at the speed of data acquisition while maintaining secure, on-premise infrastructure.